History: R_test

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Preview of version: 46

R_test intends to be an easy way of testing PluginR development (http://dev.tikiwiki.org/PluginR) on advanced usage, where a basic pretty tracker workflow is needed for users to upload a file with data to be processed, and an page with a program in R language has to process it and produce some output for that user.

There are 3 sets of tests for the time being:
  • Test1. Testing procedure to process csv file with data through an R script in a wiki page, by means of submitting a new tracker item with that csv file as attachment.
  • Test2. Testing many basic R commands with good and wrong syntaxes. some of them include Pretty Tracker display through .tpl file on disk as template.
  • Test3. Testing the process of allowing the user to chose some params to be used in some simple R script.
  • Test4 (to be implemented yet). Testing the process of allowing the user to edit some params of a graph produced by some simple R script.


These pages will be created:


YAML
preferences:
 feature_trackers: y
 feature_user_watches: y 
 wikiplugin_r: y
 instructions: r_test1
objects:
 -
  type: tracker
  ref: r_test_tracker1
  data:
   name: Datasets
   description: Standard dataset tracker
   default_status: open
   show: [ status, creation_date, modification_date, list_modification_date ]
   allow: [ comments, attachments ]
 -
  type: tracker_field
  ref: r_test_summary
  data:
   name: Summary
   tracker: $r_test_tracker1
   type: text_field
   flags: [ searchable, public, list, mandatory, link ]
   order: 10
 -
  type: tracker_field
  ref: r_test_description
  data:
   name: Description
   tracker: $r_test_tracker1
   type: text_area
   options: 1
   flags: [ public, mandatory ]
   order: 20
 -
  type: tracker_field
  ref: r_test_from
  data:
   name: From user
   tracker: $r_test_tracker1
   type: user
   flags: [ searchable, public, list ]
   order: 30
 -
  type: tracker_field
  ref: r_test_attachment
  data:
   name: Dataset file
   tracker: $r_test_tracker1
   type: attachment
   flags: [ searchable, public, list ]
   order: 40
 -
  type: tracker_field
  ref: r_test_xmin
  data:
   name: Minimum value for axis X
   tracker: $r_test_tracker1
   type: text_field
   flags: [ searchable, public, list, mandatory, link ]
   order: 50
 -
  type: tracker_field
  ref: r_test_xmax
  data:
   name: Maximum value for axis X
   tracker: $r_test_tracker1
   type: text_field
   flags: [ searchable, public, list, mandatory, link ]
   order: 60


Groups & Permissions

YAML
permissions:
 Anonymous:
  allow: view
  deny: [ ]
 Registered:
  description: Will be ignored because group is already created
  allow:
   - create_tracker_items
   - list_trackers
   - view_trackers
   - watch_trackers
  deny: [  ]
  objects:
   -
    type: wiki_page
    id: r_test3_template01
    allow: use_as_template
 Editors:
  description: Trusted users
  allow:
   - modify_tracker_items
 Admins:
  description: Have all rights
  allow: [ admin ]



Sample data


YAML
objects:
 -
  type: tracker_item
  ref: dataset_001
  data:
   tracker: $r_test_tracker1
   status: open
   values:
    - [ $r_test_summary, Sample dataset ]
    - [ $r_test_from, admin ]
    - [ $r_test_description, "This dataset was created as part of the sample data for r_test." ]
    - [ $r_test_attachment, ]
    - [ $r_test_xmin, 1]
    - [ $r_test_xmax, 10]
 -
  type: tracker_item
  ref: dataset_002
  data:
   tracker: $r_test_tracker1
   status: pending
   values:
    - [ $r_test_summary, We are working on this dataset ]
    - [ $r_test_from, admin ]
    - [ $r_test_description, "This will soon be changed" ]
    - [ $r_test_attachment, ]
    - [ $r_test_xmin, 21]
    - [ $r_test_xmax, 30]
 -
  type: tracker_item
  ref: dataset_003
  data:
   tracker: $r_test_tracker1
   status: closed
   values:
    - [ $r_test_summary, A really old dataset ]
    - [ $r_test_from, admin ]
    - [ $r_test_description, "This dataset is outdated." ]
    - [ $r_test_attachment, ]
    - [ $r_test_xmin, 100]
    - [ $r_test_xmax, 110]


Modules

YAML
objects:
 -
  type: module
  ref: module_last_modif_tracker_items
  data:
   name: last_modif_tracker_items
   groups: [ Anonymous, Registered ]
   position: right
   order: 5
   params:
    trackerId: $r_test_tracker1
    name: Summary



Wiki pages


YAML
preferences:
  enable: [ feature_wiki ]
objects:
  -
    type: wiki_page
    ref:  r_test1_page
    data:
      name: r_test1
      description: Interface to send datasets
      lang: en
      mode: create_or_update
      content: wikicontent:Profile_r_test1
  -
    type: wiki_page
    ref:  r_test1_analysis_page
    data:
      name: r_test1_analysis
      description: Interface to show the results from the analysis
      lang: en
      mode: create_or_update
      content: wikicontent:Profile_r_test1_analysis
  -
    type: wiki_page
    ref:  r_test2_page
    data:
      name: r_test2
      description: Interface to send datasets
      lang: en
      mode: create_or_update
      content: wikicontent:Profile_r_test2
  -
    type: wiki_page
    ref:  r_test2_template01_page
    data:
      name: r_test2_template01
      description: Template for smarty tpl on disk
      lang: en
      mode: create_or_update
      content: wikicontent:Profile_r_test2_template01
  -
    type: wiki_page
    ref:  r_test3_page
    data:
      name: r_test3
      description: Interface to change graph params and display png
      lang: en
      mode: create_or_update
      content: wikicontent:Profile_r_test3
  -
    type: wiki_page
    ref:  r_test3_template01_page
    data:
      name: r_test3_template01
      description: Template for wiki page
      lang: en
      mode: create_or_update
      content: wikicontent:Profile_r_test3_template01


Useful navigational aid

Wiki Page for the Menu

This will add the page Profile_r_test_menupage as the menu content

YAML
objects:
  -
    type: wiki_page
    ref: r_test_menupage_include
    data:
      name: Menu
      description: Collaborative simple menu
      lang: en
      mode: create_or_update
      content: wikicontent:Profile_r_test_menupage


Module wiki side menu

YAML
objects:
 -
  type: module
  ref: module_menupage
  data:
   name: menupage
   position: right
   groups: [ Anonymous, Registered ]
   order: 2
   params:
    pagemenu: Menu


Extra features enabled for this wiki side menu

Add smileys for an easy way to add icons for bullets in the wiki page menu, without making them too much on the right.
YAML
preferences:
 feature_smileys: y
 wikiplugin_img: y
 wikiplugin_div: y
 wikiplugin_listpages: y
 wikiplugin_titlesearch: y
 wikiplugininline_div: y
 wikiplugininline_img: y
 wikiplugininline_listpages: y
 wikiplugininline_titlesearch: y


Todo

  • add attachment field
  • send to page with R program to process the data in the attId

Links

History

Information Version
Wed 09 of Jun, 2010 12:40 GMT-0000 Xavier de Pedro 69
Wed 09 of Jun, 2010 12:34 GMT-0000 Xavier de Pedro new page for instructions added 68
Tue 08 of Jun, 2010 17:32 GMT-0000 Xavier de Pedro 67
Tue 08 of Jun, 2010 17:29 GMT-0000 Xavier de Pedro 66
Tue 08 of Jun, 2010 17:19 GMT-0000 Xavier de Pedro disable view tpl 65
Tue 08 of Jun, 2010 15:33 GMT-0000 Xavier de Pedro 64
Tue 08 of Jun, 2010 14:24 GMT-0000 Xavier de Pedro 63
Tue 08 of Jun, 2010 09:40 GMT-0000 Xavier de Pedro removed the link param from xmin and xmax tracker fields 62
Tue 08 of Jun, 2010 08:44 GMT-0000 Xavier de Pedro 61
Tue 08 of Jun, 2010 08:37 GMT-0000 Xavier de Pedro 60
Tue 08 of Jun, 2010 08:36 GMT-0000 Xavier de Pedro added the sections bit for content templates 59
Tue 08 of Jun, 2010 08:24 GMT-0000 Xavier de Pedro re-added the content template report, and edited the users definition 58
Tue 08 of Jun, 2010 08:20 GMT-0000 Xavier de Pedro temporarily removing the content template section, to see if this part is the one causing the "profile issues" report: syntax error: data: Array. Needs a 'type' and 'data'field 57
Tue 08 of Jun, 2010 08:16 GMT-0000 Xavier de Pedro 56
Tue 08 of Jun, 2010 08:09 GMT-0000 Xavier de Pedro removed false array in content template section , and added maketoc 55
Tue 08 of Jun, 2010 07:55 GMT-0000 Xavier de Pedro 54
Tue 08 of Jun, 2010 07:11 GMT-0000 Xavier de Pedro 53
Mon 07 of Jun, 2010 19:30 GMT-0000 Xavier de Pedro added missing feature to view tpl's and added reference for 4th page 52
Mon 07 of Jun, 2010 19:22 GMT-0000 Xavier de Pedro added use as template to editors as global perm also 51
Mon 07 of Jun, 2010 19:20 GMT-0000 Xavier de Pedro added features and perms for content templates and smarty templates 50
Mon 07 of Jun, 2010 17:57 GMT-0000 Xavier de Pedro added trust_input to group editors to try to avoid them to have to validate each single plugin call 49
Mon 07 of Jun, 2010 13:41 GMT-0000 Xavier de Pedro 48
Mon 07 of Jun, 2010 13:37 GMT-0000 Xavier de Pedro 47
Mon 07 of Jun, 2010 11:31 GMT-0000 luciash d' being 🧙 46
Mon 07 of Jun, 2010 11:01 GMT-0000 luciash d' being 🧙 45